Datasets

36 datasets

HealthData.Gov

IgBLAST

IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin as well as T cell receptor (TR) sequences. It uses BLAST search algorithm.

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Updated Oct 29, 2026

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Transcriptome Shotgun Assembly (TSA) Sequence Database and Submissions

TSA is an archive of computationally assembled transcript sequences from primary data such as ESTs and Next Generation Sequencing Technologies. The overlapping sequence reads from a complete transcriptome are assembled…

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Updated Oct 29, 2026

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Open Reading Frame Finder (ORF Finder)

A graphical analysis tool that finds all open reading frames in a user's sequence or in a sequence already in the database.

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Updated Oct 29, 2026

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Journal Article Tag Suite (JATS)

Journal Article Tag Suite (JATS) is an application of NISO Z39.96.2019, which defines a set of XML elements and attributes for describing the textual and graphical content of journal articles and describes three article…

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Updated Oct 29, 2026

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Multiple Sequence Alignment (MSA) Viewer

An interactive Web application that enables users to visualize multiple alignments created by database search results or other software applications. The MSA Viewer allows users to upload an alignment and set a master…

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Updated Oct 29, 2026

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PSSM Viewer

Users can display, sort, subset and download position-specific score matrices (PSSMs) either from CDD records or from Position Specific Iterated (PSI)-BLAST protein searches.

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Updated Oct 29, 2026

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I-MAGIC

I-MAGIC (Interactive Map-Assisted Generation of ICD Codes) is an interactive tool to demonstrate how the SNOMED CT to ICD-10-CM map can be used to generate ICD-10-CM codes from clinical problems coded in SNOMED CT.

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Updated Oct 29, 2026

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Database of Short Genetic Variations (dbSNP)

Database of Short Genetic Variations (dbSNP) contains human single nucleotide variations, microsatellites, and small-scale insertions and deletions along with publication, population frequency, molecular consequence,…

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Updated Oct 29, 2026

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NCBI Submission Portal

A single entry point for users to link to and find information about data submission processes at NCBI.

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Updated Oct 29, 2026

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UCUM-LHC

A JavaScript package that can be included in webpages or programs and used for validating and converting unit expressions from the Unified Code for Units of Measure (UCUM).

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Updated Oct 29, 2026

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Genetic Testing Registry (GTR)

Genetic Testing Registry (GTR) is a free, centralized voluntary registry of comprehensive genetic test information covering clinical and research tests for Mendelian disorders and drug responses including multigenic,…

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Updated Oct 29, 2026

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Constraint-Based Multiple Alignment Tool (COBALT)

Constraint-Based Multiple Alignment Tool (COBALT) is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and…

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Updated Oct 29, 2026

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RxNav

An application for navigating RxNorm drugs. This applications displays relations among drug entities in RxNorm and provides additional information about RxNorm drugs, including drug classes, pill images and drug-drug…

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Updated Oct 29, 2026

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Structure - Molecular Modeling Database (MMDB)

Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships,…

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Updated Oct 29, 2026

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SPDI Variation Service

This genetic variation services interconvert and transform short genetic variants between HGVS expressions, VCF format, and the new SPDI (Sequence Position Deletion Insertion) format, based on alignment datasets used by…

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Updated Oct 29, 2026

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Sequence Read Archive (SRA)

The Sequence Read Archive (SRA) stores sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Life Technologies AB SOLiD System®, Helicos Biosciences…

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Updated Oct 29, 2026